{"product_id":"transposable-elements-miguel-r-branco-9781071628829","title":"Transposable Elements: Methods and Protocols","description":"\u003cp\u003e1. An overview of best practices for transposable element identification, classification and annotation in eukaryotic genomes\u003c\/p\u003e \u003cp\u003eFernando Rodriguez and Irina R. Arkhipova\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e2. Assembly-free annotation and quantification of transposable elements with dnaPipeTE\u003c\/p\u003e Cl駑ent Goubert\u003cp\u003e\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e3. Best practice for the identification of horizontally transferred transposons\u003c\/p\u003e \u003cp\u003eJames D Galbraith, Zhipeng Qu, Atma M Ivancevic, David L Adelson\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e4. Genotyping of transposable elements insertions segregating in the human populations using short-read re-alignments\u003c\/p\u003e \u003cp\u003eXun Chen, Guillaume Bourque, and Cl駑ent Goubert\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e5. A Pangenome approach to detect and genotype TE insertion polymorphisms\u003c\/p\u003e \u003cp\u003eCristian Groza, Guillaume Bourque, and Cl駑ent Goubert\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e6. Experimental validation of transposable element insertions using the Polymerase Chain Reaction (PCR)\u003c\/p\u003e \u003cp\u003eMiriam Merenciano, Marta Coronado-Zamora, and Josefa Gonz疝ez\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e 7. Quantification of LINE-1 RNA expression from bulk RNA-seq using L1EM\u003cp\u003e\u003c\/p\u003e \u003cp\u003eWilson McKerrow\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e8. Genome-wide profiling of L1 DNA methylation by bs-ATLAS-seq\u003c\/p\u003e \u003cp\u003eClaude Philippe and Gael Cristofari\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e9. Nanopore epigenomic analysis of transposable element DNA modifications\u003c\/p\u003e \u003cp\u003eNathan Smits and Geoffrey Faulkner\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e10. Targeted resequencing and methylation analysis of L1 elements by nanopore sequencing\u003c\/p\u003e \u003cp\u003eArpita Sarkar, Sophie Lanciano, and Gael Cristofari\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e11. Inferring protein-DNA binding profiles at interspersed repeats using HiChIP and PatChER\u003c\/p\u003e \u003cp\u003eDarren Taylor and Miguel R Branco\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e12. Affinity-based Interactome Analysis of Endogenous LINE-1 Macromolecules\u003c\/p\u003e Luciano H. Di Stefano, Leila Saba, Mehrnoosh Oghbaie, Hua Jiang, Wilson McKerrow, Maria Benitez-Guijarro, Martin S. Taylor, and John LaCava\u003cp\u003e\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e13. LINE-1 retrotransposition assays in embryonic stem cells\u003c\/p\u003e \u003cp\u003eMarta Garcia-Canadas, Francisco Sanchez-Luque, Laura Sanchez, Johana Rojas, and Jose Garcia Perez\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e 14. Detecting somatic transposable element insertions in Drosophila tissues\u003cp\u003e\u003c\/p\u003e \u003cp\u003eKatarzyna Siudeja\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e15. Precise and scarless insertion of transposable elements by Cas9-mediated genome engineering\"\u003c\/p\u003e \u003cp\u003eVivien M Weber, Aurelien J Doucet, and Gael Cristofari\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e16. Epigenetic editing of transposable and repetitive elements\u003c\/p\u003e \u003cp\u003eJoanna M Jachowicz\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e17. Using CRISPR to investigate the regulatory activity of transposable elements\u003c\/p\u003e \u003cp\u003eDavid M Simpson, Conor R Kelly, and Edward B Chuong\u003c\/p\u003e\u003cbr\u003e\u003cbr\u003e\u003cb\u003eAuthor:\u003c\/b\u003e Miguel R. Branco\u003cbr\u003e\u003cb\u003eISBN-10:\u003c\/b\u003e 1071628828\u003cbr\u003e\u003cb\u003eISBN-13:\u003c\/b\u003e 9781071628829\u003cbr\u003e\u003cb\u003ePublisher:\u003c\/b\u003e Humana\u003cbr\u003e\u003cb\u003eLanguage:\u003c\/b\u003e English\u003cbr\u003e\u003cb\u003ePublished:\u003c\/b\u003e 12\/01\/2022\u003cbr\u003e\u003cb\u003ePages:\u003c\/b\u003e 382\u003cbr\u003e\u003cb\u003eFormat:\u003c\/b\u003e Hardcover\u003cbr\u003e\u003cb\u003eWeight:\u003c\/b\u003e 1.98lbs\u003cbr\u003e\u003cb\u003eSize:\u003c\/b\u003e 10.00h x 7.00w x 0.88d","brand":"Miguel R. Branco","offers":[{"title":"Hardcover","offer_id":44122912588031,"sku":"9781071628829","price":249.99,"currency_code":"USD","in_stock":true}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0662\/2982\/9887\/files\/img_5aeeb434-187c-4d8f-a08e-cf916c4a01d6.jpg?v=1687427829","url":"https:\/\/www.whiterainbookhouse.com\/products\/transposable-elements-miguel-r-branco-9781071628829","provider":"WR Book House","version":"1.0","type":"link"}