{"product_id":"variant-calling-charlotte-ng-9781071622926","title":"Variant Calling: Methods and Protocols","description":"\u003cp\u003e1. Data Processing and Germline Variant Calling with the Sentieon pipeline\u003c\/p\u003e \u003cp\u003eRafael Aldana and Donald Freed\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e2. MuSE: A Novel Approach to Mutation Calling with Sample-Specific Error Modeling\u003c\/p\u003e \u003cp\u003eShuangxi Ji, Matthew D. Montierth, and Wenyi Wang\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e 3. Octopus: Genotyping and Haplotyping in Diverse Experimental Designs\u003cp\u003e\u003c\/p\u003e \u003cp\u003eDaniel P Cooke\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e4. Accurate Ensemble Prediction of Somatic Mutations with SMuRF2\u003c\/p\u003e \u003cp\u003eWeitai Huang, Ngak Leng Sim, and Anders J Skanderup\u003c\/p\u003e \u003cp\u003e\u003c\/p\u003e \u003cp\u003e5. Detecting Medium and Large Insertions and Deletions with Transindel\u003c\/p\u003e \u003cp\u003eTing-You Wang and Rendong Yang\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e6, DECoN: A detection and visualisation tool for exonic copy number variants \u003c\/p\u003e \u003cp\u003eAnna Fowler\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e7. FACETS: Fraction and Allele-Specific Copy Number Estimates from Tumor Sequencing\u003c\/p\u003e \u003cp\u003eArshi Arora, Ronglai Shen, and Venkatraman E. Seshan\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e8. Meerkat: An Algorithm to Reliably Identify Structural Variations and Predict Their Forming Mechanisms\u003c\/p\u003e \u003cp\u003eLixing Yang\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e9. Structural Variant Detection from Long-Read Sequencing Data with cuteSV\u003c\/p\u003e \u003cp\u003eTao Jiang, Shiqi Liu, Shuqi Cao, and Yadong Wang\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e10. Identifying Somatic Mitochondrial DNA Mutations\u003c\/p\u003e Jisong An, Kyoung Il Min, and Young Seok Ju\u003cp\u003e\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e11. Identification, Quantification, and Testing of Alternative Splicing Events from RNA-Seq data using SplAdder\u003c\/p\u003e \u003cp\u003ePhilipp Markolin, Gunnar R舩sch, and Andre Kahles\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e 12. PipeIT: Somatic Variant Calling Workflow for Ion Torrent Sequencing Data \u003cp\u003eAndrea Garofoli, D駸ir馥 Schnidrig, and Charlotte K Y Ng\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e13. Variant calling from RNA-seq data using the GATK joint genotyping workflow\u003c\/p\u003e \u003cp\u003e Jean-Simon Brouard and Nathalie Bissonnette\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e14. UMI-Varcal: a low-frequency variant caller for UMI-tagged paired-end sequencing data\u003c\/p\u003e \u003cp\u003eVincent Sater, Pierre-Julien Viailly, Thierry Lecroq, ﾉlise Prieur-Gaston, ﾉlodie Bohers, Mathieu Viennot, Philippe Ruminy H駘鈩e Dauchel, Pierre Vera, and Fabrice Jardin\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e15. Alignment-free genotyping of known variations with MALVA\u003c\/p\u003e \u003cp\u003e Giulia Bernardini, Luca Denti, and Marco Previtali \u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e16. Kmer2SNP: Reference-free heterozygous SNP calling using k-mer frequency distributions Yanbo Li, Hardip Patel, and Yu Lin\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e17. Somatic Single Nucleotide Variant Calling from Single Cell DNA sequencing data using SCAN-SNV\u003c\/p\u003e \u003cp\u003eSajedeh Bahonar and Hesam Montazeri\u003c\/p\u003e \u003cp\u003e\u003c\/p\u003e \u003cp\u003e18. Copy Number Variation Detection by Single-Cell DNA sequencing with SCOPE\u003c\/p\u003e \u003cp\u003eRujin Wang and Yuchao Jiang\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e \u003cp\u003e19. Variant Annotation and Functional Prediction: SnpEff \u003c\/p\u003e \u003cp\u003ePablo Cingolani\u003c\/p\u003e \u003cp\u003e \u003c\/p\u003e 20. Annotating Cancer-Related Variants At Protein-Protein Interface with Structure-PPi Miguel Vazquez and Tirso Pons \u003cp\u003e \u003c\/p\u003e 21. Preanalytical Variables and Sample Quality Control For Clinical Variant Analysis\u003cp\u003e\u003c\/p\u003e Ilaria Alborelli and Philip M. Jermann \u003cp\u003e \u003c\/p\u003e\u003cbr\u003e\u003cbr\u003e\u003cb\u003eAuthor:\u003c\/b\u003e Charlotte Ng\u003cbr\u003e\u003cb\u003eISBN-10:\u003c\/b\u003e 1071622927\u003cbr\u003e\u003cb\u003eISBN-13:\u003c\/b\u003e 9781071622926\u003cbr\u003e\u003cb\u003ePublisher:\u003c\/b\u003e Humana\u003cbr\u003e\u003cb\u003eLanguage:\u003c\/b\u003e English\u003cbr\u003e\u003cb\u003ePublished:\u003c\/b\u003e 06\/26\/2022\u003cbr\u003e\u003cb\u003ePages:\u003c\/b\u003e 354\u003cbr\u003e\u003cb\u003eFormat:\u003c\/b\u003e Hardcover\u003cbr\u003e\u003cb\u003eWeight:\u003c\/b\u003e 1.88lbs\u003cbr\u003e\u003cb\u003eSize:\u003c\/b\u003e 10.00h x 7.00w x 0.81d","brand":"Charlotte Ng","offers":[{"title":"Hardcover","offer_id":44123300561151,"sku":"9781071622926","price":249.99,"currency_code":"USD","in_stock":true}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0662\/2982\/9887\/files\/img_c7ff0ce1-6221-47bb-9548-4dc436fcac2b.jpg?v=1687430097","url":"https:\/\/www.whiterainbookhouse.com\/products\/variant-calling-charlotte-ng-9781071622926","provider":"WR Book House","version":"1.0","type":"link"}